- fix Add when  this is empty
 - fix FindIndex
 - add a new method Add passing just an HypoTestResult


git-svn-id: http://root.cern.ch/svn/root/trunk@41725 27541ba8-7e3a-0410-8455-c3a389f83636

Add mouse event handling in TRootContextmenu. This should solve an issue with context menus being being stuck when embedding canvases in external GUI frameworks (e.g. gtk, Qt, ...) - on Linux only.


git-svn-id: http://root.cern.ch/svn/root/trunk@41724 27541ba8-7e3a-0410-8455-c3a389f83636

first version of the TThreadPool class and two test programs.


git-svn-id: http://root.cern.ch/svn/root/trunk@41723 27541ba8-7e3a-0410-8455-c3a389f83636

merge changes of Kyle in histfactory schema from roostats development
branch (revision 41704).


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after -lfreetype. Fixes issue #88347.


git-svn-id: http://root.cern.ch/svn/root/trunk@41716 27541ba8-7e3a-0410-8455-c3a389f83636

   PiecewiseInterpolation

    - Add protection for use of _interpCode for legacy
      classes read from a workspace (will crash otherwise)


git-svn-id: http://root.cern.ch/svn/root/trunk@41711 27541ba8-7e3a-0410-8455-c3a389f83636

   Fix for assorted compiler warnings from nightlies (mostly unused params)


git-svn-id: http://root.cern.ch/svn/root/trunk@41710 27541ba8-7e3a-0410-8455-c3a389f83636

  o RooTreeDataStore

    - Introduce explicit alternate buffer handling in loadValues
      making this function robust for copying datasets that
      are attached inside test statistics

  o RooAbsOptTestStatistic

    - In copy ctor, use internal clones of pdf and data as input
      rather than the original pdf and data pointers stored in
      the source object


git-svn-id: http://root.cern.ch/svn/root/trunk@41709 27541ba8-7e3a-0410-8455-c3a389f83636

git-svn-id: http://root.cern.ch/svn/root/trunk@41708 27541ba8-7e3a-0410-8455-c3a389f83636

git-svn-id: http://root.cern.ch/svn/root/trunk@41707 27541ba8-7e3a-0410-8455-c3a389f83636

set the global observables in the FrequentistCalculator and not in the base HypoTestCalculatorGeneric, since the HybridCalculator does not need the global observables


git-svn-id: http://root.cern.ch/svn/root/trunk@41706 27541ba8-7e3a-0410-8455-c3a389f83636

   o RooVectorDataStore

     - Correct version this time (with proper support for persistent)


   o RooAbsOptTestStatistics

     - Initialize all pointer data members in all ctors


   o RooCompositeDataStore

     - Implement sumEntries() as forward to components


   o RooAbsArg

     - Another fix for windows static linking


git-svn-id: http://root.cern.ch/svn/root/trunk@41703 27541ba8-7e3a-0410-8455-c3a389f83636

git-svn-id: http://root.cern.ch/svn/root/trunk@41702 27541ba8-7e3a-0410-8455-c3a389f83636

git-svn-id: http://root.cern.ch/svn/root/trunk@41701 27541ba8-7e3a-0410-8455-c3a389f83636

Last week Martin Vala from ALICE came to me with a problem that he had
while using the asynchronous prefetching. There were basically two
main problems:

1. Trying to read a root file from an archive. Here the problem was
that when reading from an archive there is an offset of the file which
was not taken into consideration when the file was saved in the cache.
And this lead to a miss when reading the file from cache. I fixed it,
but I had to expose the value of fArchiveOffset from TFile.

2. The second problem was when reading using a TChain. There were some
synchronization issues concerned to the asynchronous thread that
actually does the reading. All this was happening because in the case
of TChain there is only one file cache which is re-utilized as we move
from one file to another. This was a pretty tricky issue.

I attached a patch made against the current trunk which fixes both
this problems. I gave the patch first to Martin to test it, and he was
satisfied with it. There is a small delay when the TChain moves from
one file to another because I have to wait for the async thread to
finish it's worked but over all Martin said that the performance is
way better than before. When I initially did the asyn pre-fetching I
had no idea about these two use cases, so that's why they popped up
now.




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git-svn-id: http://root.cern.ch/svn/root/trunk@41693 27541ba8-7e3a-0410-8455-c3a389f83636

Make sure the clones are register both with the underlying tree and the TChain itself (was missing until now).  This fixes <http://savannah.cern.ch/bugs/?88339>


git-svn-id: http://root.cern.ch/svn/root/trunk@41692 27541ba8-7e3a-0410-8455-c3a389f83636

git-svn-id: http://root.cern.ch/svn/root/trunk@41691 27541ba8-7e3a-0410-8455-c3a389f83636

In Windows R__ANSISTREAM is defined and std::isfinite does not exist


git-svn-id: http://root.cern.ch/svn/root/trunk@41690 27541ba8-7e3a-0410-8455-c3a389f83636

git-svn-id: http://root.cern.ch/svn/root/trunk@41689 27541ba8-7e3a-0410-8455-c3a389f83636

 with icc version 11 when used in combination with gcc > 4.3 one cannot use std::isnan but just ::isnan from math.h


git-svn-id: http://root.cern.ch/svn/root/trunk@41687 27541ba8-7e3a-0410-8455-c3a389f83636

Fix Drawing a top level object (usually TBits).  See http://root.cern.ch/phpBB3/viewtopic.php?t=13629


git-svn-id: http://root.cern.ch/svn/root/trunk@41686 27541ba8-7e3a-0410-8455-c3a389f83636

  o RooAbsArg

    - Fix windows static linking issue


  o RooAbsData, stressRooFit

     - Select vector-based storage by default


git-svn-id: http://root.cern.ch/svn/root/trunk@41685 27541ba8-7e3a-0410-8455-c3a389f83636

  roofit/histfactory

    - Import changes from dev-roostats branch

  roofit/roostats
 
    - Import update on HypoTestInverterResult and HypoTestInverterPlot
      from dev branch (only fixes for compiler warnings)

  roofit/roofit

    - Import new classes Roo1DMomentMorphFunction and Roo2DMomentMorphFunction
      from dev-roostats branch (contribution by Max Baak)


git-svn-id: http://root.cern.ch/svn/root/trunk@41684 27541ba8-7e3a-0410-8455-c3a389f83636

git-svn-id: http://root.cern.ch/svn/root/trunk@41682 27541ba8-7e3a-0410-8455-c3a389f83636

In TSeqCollection::Merge adding a TList of objects without a Merge method (e.g. TObjString)
to the output list did *not* work properly, in the sense that all but one set of objects is lost. 
This is because TSeqCollection::Merge (used by TList) is ignoring non mergeable objects instead 
of just adding them to the original list as we do at higher level in PROOF. 
This patch update the behavior of TSeqCollection::Merge to append the non-mergeable objects.


git-svn-id: http://root.cern.ch/svn/root/trunk@41679 27541ba8-7e3a-0410-8455-c3a389f83636

  Updated version of stressRooFit


git-svn-id: http://root.cern.ch/svn/root/trunk@41678 27541ba8-7e3a-0410-8455-c3a389f83636

git-svn-id: http://root.cern.ch/svn/root/trunk@41677 27541ba8-7e3a-0410-8455-c3a389f83636

   *** Miscellaneous speed improvements ***
  
    o PiecewiseInterpolation

      - Import changes from Max baak (new interpolation options)

      - Deploy fast iterators


    o RooGaussian

      - Bug fix in analytical integral over 'mean' parameter (Lorenzo Moneta)


    o RooBernstein

      - Deploy fast iterators


    o RooProdPdf

      - Reorganize code for improved speed


    o RooDataHist

      - Add support for vector-based data storage


    o RooGenContext

      - Improve generation speed by putting internal pdf clone to ADirty mode


    o RooRealBinding

      - Minimize number of calls to min() and max() for efficiency reasons


    o RooAbsRealLValue

      - In randomize() Minimize number of calls to min() and max() for efficiency reasons


    o RooDataSet

      - Make addFast() even faster by disable state propagation


    o RooAbsGenContext

      - Disable state propagation in output dataset for efficiency reasons
      - Call initGenerator() only on the first generation sequence

 
    o RooVectorDataStore

      - Add support for native vs current buffers, to support the functioning
        of addColumn(s)() and cacheArgs() when the datastore is attached
        to a pdf in RooAbsOptTestStatistics

   
    o RooAbsCategoryLValue

      - Support change in RooAbsCategory to operate nominally by index rather than by label


    o RooXYChi2Var

      - Change code to support new pdf/data attachment scheme in RooAbsOptTestStatistics
        where only the store buffers are reattached and the variable objects themselves


    o RooFFTConvPdf

      - Bug fix in getActualObservables() - functionality of setCacheObs() is now restored


    o RooAbsReal

      - Small adjustments in getVal() to make it faster in most cases


    o RooAbsCollection

      - Add datamember to keep track contents is exclusively RooRealVars. For those that
        do implement a faster version of assignFast()


    o RooAbsData

      - Add methods attachBuffers() and resetBuffers() - forwarded to datastore - that
        facilite new 'fast-attach' methods used in RooAbsOptTestStatistic


    o RooCompositeDataStore

      - Fix copy constructors so that they clone and own the subsidiary datasets

      - Operate index by value rather than by string label for efficiency reasons


    o RooRealVar

      - Bug fix in attachToVStore() to properly handle RRVs with StoreError tags


    o RooAbsPdf

      - Adjustments in getVal() to make it faster for most cases
      - Modify generate(GenSpec*) to initialize specInit flag that
        triggers one-time call of initGenerator()
      - Modify generate() to not repeatedly call initGenerator() for the same gencontext

 
    o RooAbsArg

      - Deploy fast iterators in more places
      - Add various new inline methods performing multiple ops (e.g retrieving and
        clearing one or more dirty flags) for improbed RooAbsReal/RooAbsPdf::getVal()
        operations
   

    o RooBanner

      - Increment version tag to 3.48


    o RooRealIntegral

      - Add overloaded getVal() method that also checks for shapeDirty flag,
        which was removed from RooAbsReal::getVal() as it is not needed for
        any class other than RooRealIntegral


    o RooAddGenContext

      - Disable state propagation in output dataset for efficiency reasons
      - Replace ROOT container classes with STL versions for efficiency reasons


    o RooMultiCatIter

      - Adjust code to new RooCatType behaviour that by default only tracks the
        integer representation of type


    o RooProdGenContext

      - Replace ROOT container classes with STL versions for efficiency reasons


    o RooTreeDataStore

      - Adjust code so that it works with the new fast-attach mechanism used
        in RooAbsOptTestStatistic


    o RooRealProxy

      - In lvptr() remove explicit check for lvalue


    o RooSimGenContext

      - Disable state propagation in output dataset for efficiency reasons
      - Replace ROOT container classes with STL versions for efficiency reasons
      - In createDataSet() create a prototype dataset in the first call, and
        clone that for subsequent calls rather than calling the expensive named
        argument constructor each time


    o RooTrace

      - Add (dummy) method callgrind_zero() and callgrind_dump() as hook functions
        to facilitate improved callgrind profiling


    o RooAbsCategory

      - Adjust class so that it works with the integer representation of types only
        and lookup associated string label on the fly, whenever it is requested


    o RooFormular

      - Eliminate overloaded getVal() as its functionality is now provided in 
        RooAbsReal::getVal()


    o RooAbsOptTestStatistic

      - Implement new fast-attach mechanisms for pdf and datasets: only readjust the
        buffer pointers of the dataset to the pdf observables, rather than reattaching
        the pdf to the dataset observables. This results in a _much_ faster 
        operation of setData() and no longer entangles the test statistics with observables
        of datasets that may be deleted during the lifetime of the test statistic

 
    o RooSimultaneous
 
       - Overload fillDataHist() with new version with correct normalization (from Scott Snyder)


    o RooCategory

       - Adjust getLabel() so that it retries labels associated with the current index on the fly


    o RooCatType

       - Make label contents 'transient', i.e. it is not copied on assignment for faster 
         category operations. RooAbsCategory will load the associated labels on demand from now on.


git-svn-id: http://root.cern.ch/svn/root/trunk@41676 27541ba8-7e3a-0410-8455-c3a389f83636

use --as-needed (which is the default for Ubuntu 11.10 anyway).


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